Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution

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  1. Asmuth, D.M., J. Goodrich, D.A. Cooper, R. Haubrich, N. Rajicic, B. Hirschel, H. Mayer, and H. Valdez, CD4(+) T-Cell Restoration After 48 Weeks in the Maraviroc Treatment-Experienced Trials MOTIVATE 1 and 2. Jaids-Journal of Acquired Immune Deficiency Syndromes, 2010. 54(4): p. 394-397.
  2. Asmuth, D.M., R.L. Murphy, S.L. Rosenkranz, J.J.L. Lertora, S. Kottilil, Y. Cramer, E.S. Chan, R.T. Schooley, C.R. Rinaldo, N. Thielman, X.D. Li, S.M. Wahl, J. Shore, J. Janik, R.A. Lempicki, Y. Simpson, R.B. Pollard, and A.C.T.G.A. Tea, Safety, Tolerability, and Mechanisms of Antiretroviral Activity of Pegylated Interferon Alfa-2a in HIV-1-Monoinfected Participants: A Phase II Clinical Trial. Journal of Infectious Diseases, 2010. 201(11): p. 1686-1696.
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  6. Campbell, M., W.R. Lie, J. Zhao, D. Hayes, J. Mistry, H.J. Kung, P.A. Luciw, and I.H. Khan, Multiplex Analysis of Src Family Kinase Signaling by Microbead Suspension Arrays. Assay and Drug Development Technologies, 2010. 8(4): p. 488-496.
  7. Chang, P.C., L.D. Fitzgerald, D.A. Hsia, Y. Izumiya, C.Y. Wu, W.P. Hsieh, S.F. Lin, M. Campbell, K.S. Lam, P.A. Luciw, C.G. Tepper, and H.J. Kung, Histone Demethylase JMJD2A Regulates Kaposi's Sarcoma-Associated Herpesvirus Replication and Is Targeted by a Viral Transcriptional Factor. Journal of Virology, 2011. 85(7): p. 3283-3293.
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  9. Chen, H.L., S.J. Libertini, M. George, S. Dandekar, C.G. Tepper, B. Al-Bataina, H.J. Kung, P.M. Ghosh, and M. Mudryj, Genome-wide analysis of androgen receptor binding and gene regulation in two CWR22-derived prostate cancer cell lines. Endocrine-Related Cancer, 2010. 17(4): p. 857-873.
  10. Cogger, V.C., G.P. McNerney, T. Nyunt, L.D. DeLeve, P. McCourt, B. Smedsrod, D.G. Le Couteur, and T.R. Huser, Three-dimensional structured illumination microscopy of liver sinusoidal endothelial cell fenestrations. Journal of Structural Biology, 2010. 171(3): p. 382-388.
  11. Coleman, M.A., Models and Confounding Factors in Biomarker Development. Environmental and Molecular Mutagenesis, 2010. 51(7): p. 698-698.
  12. Dale, B.M., G.P. McNerney, W. Hubner, T.R. Huser, and B.K. Chen, Tracking and quantitation of fluorescent HIV during cell-to-cell transmission. Methods, 2011. 53(1): p. 20-26.
  13. Demos, S.G., P. DeMange, R.A. Negres, and M.D. Feit, Investigation of the electronic and physical properties of defect structures responsible for laser-induced damage in DKDP crystals. Optics Express, 2010. 18(13): p. 13788-13804.
  14. Ding, Y.Z., L.F. Hong, B.Q. Nie, K.S. Lam, and T.R. Pan, Capillary-driven automatic packaging. Lab on a Chip, 2011. 11(8): p. 1464-1469.
  15. Fedor, M., R.F. Berman, J.P. Muizelaar, and B.G. Lyeth, Hippocampal Theta Dysfunction after Lateral Fluid Percussion Injury. Journal of Neurotrauma, 2010. 27(9): p. 1605-1615.
  16. Fischer, N.O., C.D. Blanchette, B.W. Segelke, M. Corzett, B.A. Chromy, E.A. Kuhn, G. Bench, and P.D. Hoeprich, Isolation, Characterization, and Stability of Discretely-Sized Nanolipoprotein Particles Assembled with Apolipophorin-III. Plos One, 2010. 5(7).
  17. Fite, B.Z., M. Decaris, Y.H. Sun, Y. Sun, A. Lam, C.K.L. Ho, J.K. Leach, and L. Marcu, Noninvasive Multimodal Evaluation of Bioengineered Cartilage Constructs Combining Time-Resolved Fluorescence and Ultrasound Imaging. Tissue Engineering Part C-Methods, 2011. 17(4): p. 495-504.
  18. Ganan-Calvo, A.M., D.P. DePonte, M.A. Herrada, J.C.H. Spence, U. Weierstall, and R.B. Doak, Liquid Capillary Micro/Nanojets in Free-Jet Expansion. Small, 2010. 6(7): p. 822-824.
  19. Gao, T.J., C.D. Blanchette, W. He, F. Bourguet, S. Ly, F. Katzen, W.A. Kudlicki, P.T. Henderson, T.A. Laurence, T. Huser, and M.A. Coleman, Characterizing diffusion dynamics of a membrane protein associated with nanolipoproteins using fluorescence correlation spectroscopy. Protein Science, 2011. 20(2): p. 437-447.
  20. Gruber, J.B., G.W. Burdick, S. Chandra, and D.K. Sardar, Analyses of the ultraviolet spectra of Er3+ in Er2O3 and Er3+ in Y2O3. Journal of Applied Physics, 2010. 108(2).
  21. Henderson, P.T., M.D. Evans, and M.S. Cooke, Salvage of oxidized guanine derivatives in the (2 '-deoxy)ribonucleotide pool as source of mutations in DNA. Mutation Research-Genetic Toxicology and Environmental Mutagenesis, 2010. 703(1): p. 11-17.
  22. Hong, H.S., I. Maezawa, M. Budamagunta, S. Rana, A.B. Shi, R. Vassar, R.W. Liu, K.S. Lam, R.H. Cheng, D.H. Hua, J.C. Voss, and L.W. Jin, Candidate anti-A beta fluorene compounds selected from analogs of amyloid imaging agents. Neurobiology of Aging, 2010. 31(10): p. 1690-1699.
  23. Hsia, D.A., C.G. Tepper, M.R. Pochampalli, E.Y.C. Hsia, C. Izumiya, S.B. Huerta, M.E. Wright, H.W. Chen, H.J. Kung, and Y. Izumiya, KDM8, a H3K36me2 histone demethylase that acts in the cyclin A1 coding region to regulate cancer cell proliferation. Proceedings of the National Academy of Sciences of the United States of America, 2010. 107(21): p. 9671-9676.
  24. Jacobson, G.B., E. Gonzalez-Gonzalez, R. Spitler, R. Shinde, D. Leake, R.L. Kaspar, C.H. Contag, and R.N. Zare, Biodegradable Nanoparticles With Sustained Release of Functional siRNA in Skin. Journal of Pharmaceutical Sciences, 2010. 99(10): p. 4261-4266.
  25. Jiang, B., J.M. Zuo, D. Holec, C.J. Humphreys, M. Spackman, and J.C.H. Spence, Combined structure-factor phase measurement and theoretical calculations for mapping of chemical bonds in GaN. Acta Crystallographica Section A, 2010. 66: p. 446-450.
  26. Jiang, N. and J.C.H. Spence, Electronic ionization induced atom migration in spinel MgAl2O4. Journal of Nuclear Materials, 2010. 403(1-3): p. 147-151.
  27. Kainerstorfer, J.M., F. Amyot, M. Ehler, M. Hassan, S.G. Demos, V. Chernomordik, C.K. Hitzenberger, A.H. Gandjbakhche, and J.D. Riley, Direct curvature correction for noncontact imaging modalities applied to multispectral imaging. Journal of Biomedical Optics, 2010. 15(4).
  28. Kainerstorfer, J.M., M. Ehler, F. Amyot, M. Hassan, S.G. Demos, V. Chernomordik, C.K. Hitzenberger, A.H. Gandjbakhche, and J.D. Riley, Principal component model of multispectral data for near real-time skin chromophore mapping. Journal of Biomedical Optics, 2010. 15(4).
  29. Kambal, A., G. Mitchell, W. Cary, W. Gruenloh, Y. Jung, C. Nacey, S. Kalomoiris, M. Lindsey, G. Bauer, J.A. Nolta, and J.S. Anderson, Generation of HIV Resistant and Functional Macrophages From Hematopoietic Stem Cell Derived Induced Pluripotent Stem Cells. Blood, 2010. 116(21): p. 249-249.
  30. Khnouf, R., D. Olivero, S.G. Jin, M.A. Coleman, and Z.H. Fan, Cell-Free Expression of Soluble and Membrane Proteins in an Array Device for Drug Screening. Analytical Chemistry, 2010. 82(16): p. 7021-7026.
  31. Kirian, R.A., X.Y. Wang, U. Weierstall, K.E. Schmidt, J.C.H. Spence, M. Hunter, P. Fromme, T. White, H.N. Chapman, and J. Holton, Femtosecond protein nanocrystallography-data analysis methods. Optics Express, 2010. 18(6): p. 5713-5723.
  32. Knorr, F., Z.J. Smith, and S. Wachsmann-Hogiu, Development of a time-gated system for Raman spectroscopy of biological samples. Optics Express, 2010. 18(19): p. 20049-20058.
  33. Kohler, A.C., D.D. Gae, M.A. Richley, S. Stoll, A. Gunn, S. Lim, S.S. Martin, T.I. Doukov, R.D. Britt, J.B. Ames, J.C. Lagarias, and A.J. Fisher, Structural Basis for Hydration Dynamics in Radical Stabilization of Bilin Reductase Mutants. Biochemistry, 2010. 49(29): p. 6206-6218.
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  35. Lerner, P., M. Guadalupe, R. Donovan, J. Hung, J. Flamm, T. Prindiville, S. Sankaran-Walters, M. Syvanen, J.K. Wong, M.D. George, and S. Dandekar, The Gut Mucosal Viral Reservoir in HIV-Infected Patients Is Not the Major Source of Rebound Plasma Viremia following Interruption of Highly Active Antiretroviral Therapy. Journal of Virology, 2011. 85(10): p. 4772-4782.
  36. Li, J., R.W. Liu, K.S. Lam, L.W. Jin, and Y. Duan, Alzheimer's Disease Drug Candidates Stabilize A-beta Protein Native Structure by Interacting with the Hydrophobic Core. Biophysical Journal, 2011. 100(4): p. 1076-1082.
  37. Li, Y.P., K. Xiao, J.T. Luo, J. Lee, S.R. Pan, and K.S. Lam, A novel size-tunable nanocarrier system for targeted anticancer drug delivery. Journal of Controlled Release, 2010. 144(3): p. 314-323.
  38. Lin, B.V., S. Urayama, R.M.G. Saroufeem, D.L. Matthews, and S.G. Demos, Characterizing the origin of autofluorescence in human esophageal epithelium under ultraviolet excitation. Optics Express, 2010. 18(20): p. 21074-21082.
  39. Liu, H.P., M.R. Patel, J.A. Prescher, A. Patsialou, D.L. Qian, J.H. Lin, S. Wen, Y.F. Chang, M.H. Bachmann, Y. Shimono, P. Dalerba, M. Adorno, N. Lobo, J. Bueno, F.M. Dirbas, S. Goswami, G. Somlo, J. Condeelis, C.H. Contag, S.S. Gambhir, and M.F. Clarke, Cancer stem cells from human breast tumors are involved in spontaneous metastases in orthotopic mouse models. Proceedings of the National Academy of Sciences of the United States of America, 2010. 107(42): p. 18115-18120.
  40. Liu, R., D.S. Taylor, D.L. Matthews, and J.W. Chan, Parallel Analysis of Individual Biological Cells Using Multifocal Laser Tweezers Raman Spectroscopy. Applied Spectroscopy, 2010. 64(11): p. 1308-1310.
  41. Loh, N.D., M.J. Bogan, V. Elser, A. Barty, S. Boutet, S. Bajt, J. Hajdu, T. Ekeberg, F. Maia, J. Schulz, M.M. Seibert, B. Iwan, N. Timneanu, S. Marchesini, I. Schlichting, R.L. Shoeman, L. Lomb, M. Frank, M. Liang, and H.N. Chapman, Cryptotomography: Reconstructing 3D Fourier Intensities from Randomly Oriented Single-Shot Diffraction Patterns. Physical Review Letters, 2010. 104(22).
  42. Louie, R.F. and G.J. Kost, A POINT-OF-CARE TEST FOR H1N1 INFLUENZA Reply. Disaster Medicine and Public Health Preparedness, 2010. 4(2): p. 100-101.
  43. Marcu, L., Fluorescence lifetime in cardiovascular diagnostics. Journal of Biomedical Optics, 2010. 15(1).
  44. Marsh, R.A., N. Satake, J. Biroschak, T. Jacobs, J. Johnson, M.B. Jordan, J.J. Bleesing, A.H. Filipovich, and K.J. Zhang, STX11 Mutations and Clinical Phenotypes of Familial Hemophagocytic Lymphohistiocytosis in North America. Pediatric Blood & Cancer, 2010. 55(1): p. 134-140.
  45. Masiel, D.J., B.W. Reed, T.B. LaGrange, G.H. Campbell, T. Guo, and N.D. Browning, Time-Resolved Annular Dark Field Imaging of Catalyst Nanoparticles. Chemphyschem, 2010. 11(10): p. 2088-2090.
  46. Meier, J.D., H.T. Xie, Y. Sun, Y.H. Sun, N. Hatami, B. Poirier, L. Marcu, and D.G. Farwell, Time-resolved laser-induced fluorescence spectroscopy as a diagnostic instrument in head and neck carcinoma. Otolaryngology-Head and Neck Surgery, 2010. 142(6): p. 838-844.
  47. Moritz, T.J., C.R. Polage, D.S. Taylor, D.M. Krol, S.M. Lane, and J.W. Chan, Evaluation of Escherichia coli Cell Response to Antibiotic Treatment by Use of Raman Spectroscopy with Laser Tweezers. Journal of Clinical Microbiology, 2010. 48(11): p. 4287-4290.
  48. Moritz, T.J., D.S. Taylor, C.R. Polage, D.M. Krol, S.M. Lane, and J.W. Chan, Effect of Cefazolin Treatment on the Nonresonant Raman Signatures of the Metabolic State of Individual Escherichia coil Cells. Analytical Chemistry, 2010. 82(7): p. 2703-2710.
  49. Murley, J.S., Y. Kataoka, R.C. Miller, J.J. Li, G. Woloschak, and D.J. Grdina, SOD2-Mediated Effects Induced by WR1065 and Low-Dose Ionizing Radiation on Micronucleus Formation in RKO Human Colon Carcinoma Cells. Radiation Research, 2011. 175(1): p. 57-65.
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  51. Naiyanetr, P., P.S. Leung, J.D. Butler, L.P. Meng, J.M. Pfeiff, T.P. Kenny, K.S. Lam, M. Kurth, R.L. Coppel, A.A. Ansari, and M.E. Gershwin, IMMUNIZATION WITH ELECTROPHILIC DRUG DERIVATIVE ELICITS ANTI-MITOCHONDRIAL ANTIBODIES. Hepatology, 2010. 52(4): p. 329.
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  61. Raman, R.N., R.A. Negres, and S.G. Demos, Time-resolved microscope system to image material response following localized laser energy deposition: exit surface damage in fused silica as a case example. Optical Engineering, 2011. 50(1).
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  77. Shi, X.B., L.R. Xue, A.H. Ma, C.G. Tepper, H.J. Kung, and R.W.D. White, miR-125b Promotes Growth of Prostate Cancer Xenograft Tumor Through Targeting Pro-Apoptotic Genes. Prostate, 2011. 71(5): p. 538-549.
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  79. Spence, J.C.H., T. Vecchione, and U. Weierstall, A coherent photofield electron source for fast diffractive and point-projection imaging. Philosophical Magazine, 2010. 90(35-36): p. 4691-4702.
  80. Sun, Y., Y.H. Sun, H.T. Xie, D. Elson, M. Lam, G. Farwell, J. Cannata, K. Shung, and L. Marcu, MULTIMODAL TISSUE DIAGNOSTIC SYSTEM COMBINING TIME-RESOLVED FLUORESCENCE SPECTROSCOPY, ULTRASOUND AND PHOTOACOUSTIC IMAGING. Lasers in Surgery and Medicine, 2010: p. 51-52.
  81. Sun, Y.H., N. Hatami, M. Yee, J. Phipps, D.S. Elson, F. Gorin, R.J. Schrot, and L. Marcu, Fluorescence lifetime imaging microscopy for brain tumor image-guided surgery. Journal of Biomedical Optics, 2010. 15(5).
  82. Sun, Y.H., Y. Sun, D. Stephens, H.T. Xie, J. Phipps, R. Saroufeem, J. Southard, D.S. Elson, and L. Marcu, Dynamic tissue analysis using time- and wavelength-resolved fluorescence spectroscopy for atherosclerosis diagnosis. Optics Express, 2011. 19(5): p. 3890-3901.
  83. Thampi, S., D. Salmi, S. Imashuku, J. Ducore, and N. Satake, Thrombotic Thrombocytopenic Purpura in a Child With Systemic Lupus Erythematosus. Journal of Pediatric Hematology Oncology, 2011. 33(3): p. 221-223.
  84. Townsend, J.B., F. Shaheen, R.W. Liu, and K.S. Lam, Jeffamine Derivatized TentaGel Beads and Poly(dimethylsiloxane) Microbead Cassettes for Ultrahigh-Throughput in Situ Releasable Solution-Phase Cell-Based Screening of One-Bead-One-Compound Combinatorial Small Molecule Libraries. Journal of Combinatorial Chemistry, 2010. 12(5): p. 700-712.
  85. Trikha, R., C. Yeung, S. Modjtahedi, S. Martin, D.M. Dwyre, and D.G. Telander, B-CELL LYMPHOMA LINE (RAJI) VIABILITY AND SURFACE MARKER EXPRESSION MINIMALLY AFFECTED BY 20-AND 25-GAUGE VITRECTOMY SYSTEMS ANALYZED BY FLOW CYTOMETRY. Retina-the Journal of Retinal and Vitreous Diseases, 2010. 30(9): p. 1505-1510.
  86. Weeks, T., I.W. Schie, S. Wachsmann-Hogiu, and T. Huser, Signal generation and Raman-resonant imaging by non-degenerate four-wave mixing under tight focusing conditions. Journal of Biophotonics, 2010. 3(3): p. 169-175.
  87. Wilson, D.C., G.P. Grim, I.L. Tregillis, M.D. Wilke, M.V. Patel, S.M. Sepke, G.L. Morgan, R. Hatarik, E.N. Loomis, C.H. Wilde, J.A. Oertel, V.E. Fatherley, D.D. Clark, D.N. Fittinghoff, D.E. Bower, M.J. Schmitt, M.M. Marinak, D.H. Munro, F.E. Merrill, M.J. Moran, T.S.F. Wang, C.R. Danly, R.A. Hilko, S.H. Batha, M. Frank, and R. Buckles, Modeling the National Ignition Facility neutron imaging system. Review of Scientific Instruments, 2010. 81(10).
  88. Xiang, B., G. Sun, K.S. Lam, and K. Xiao, Novel poly(ethylene-co-acrylic acid) nanofibrous biomaterials for peptide synthesis and biomedical applications. Journal of Biomedical Materials Research Part A, 2010. 95A(1): p. 245-255.
  89. Xiao, K., Y.P. Li, J.T. Luo, J.S. Lee, W.W. Xiao, A.M. Gonik, R.G. Agarwal, and K.S. Lam, The effect of surface charge on in vivo biodistribution of PEG-oligocholic acid based micellar nanoparticles. Biomaterials, 2011. 32(13): p. 3435-3446.
  90. Xiao, W.W., Y. Wang, E.Y. Lau, J.T. Luo, N.H. Yao, C.Y. Shi, L. Meza, H. Tseng, Y. Maeda, P. Kumaresan, R.W. Liu, F.C. Lightstone, Y. Takada, and K.S. Lam, The Use of One-Bead One-Compound Combinatorial Library Technology to Discover High-Affinity alpha v beta 3 Integrin and Cancer Targeting Arginine-Glycine-Aspartic Acid Ligands with a Built-in Handle. Molecular Cancer Therapeutics, 2010. 9(10): p. 2714-2723.
  91. Ye, Y., D.T. Yin, L. Chen, Q.S. Zhou, R.L. Shen, G. He, Q.T. Yan, Z.Y. Tong, A.C. Issekutz, C.L. Shapiro, S.H. Barsky, H.F. Lin, J.J. Li, and J.X. Gao, Identification of Piwil2-Like (PL2L) Proteins that Promote Tumorigenesis. Plos One, 2010. 5(10).
  92. Zaragoza, M.M., S. Sankaran-Walters, D.R. Canfield, J.K.S. Hung, E. Martinez, A.J. Ouellette, and S. Dandekar, Persistence of Gut Mucosal Innate Immune Defenses by Enteric alpha-Defensin Expression in the Simian Immunodeficiency Virus Model of AIDS. Journal of Immunology, 2011. 186(3): p. 1589-1597.
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1.              Baer, G.M., Wilson, T.S., Small, W., Hartman, J., Benett, W.J., Matthews, D.L. & Maitland, D.J. Thermomechanical Properties, Collapse Pressure, and Expansion of Shape Memory Polymer Neurovascular Stent Prototypes. Journal of Biomedical Materials Research Part B-Applied Biomaterials 90B, 421-429 (2009).

2.              Baker, S.E., Hopkins, R.C., Blanchette, C.D., Walsworth, V.L., Sumbad, R., Fischer, N.O., Kuhn, E.A., Coleman, M., Chromy, B.A., Letant, S.E., Hoeprich, P.D., Adams, M.W.W. & Henderson, P.T. Hydrogen Production by a Hyperthermophilic Membrane-Bound Hydrogenase in Water-Soluble Nanolipoprotein Particles. Journal of the American Chemical Society 131, 7508-+ (2009).


4.              Blanchette, C.D., Segelke, B.W., Fischer, N., Corzett, M.H., Kuhn, E.A., Cappuccio, J.A., Benner, W.H., Coleman, M.A., Chromy, B.A., Bench, G., Hoeprich, P.D. & Sulchek, T.A. Characterization and Purification of Polydisperse Reconstituted Lipoproteins and Nanolipoprotein Particles. International Journal of Molecular Sciences 10, 2958-2971 (2009).

5.              Brock, T.K., Gentile, N.L., Louie, R.F., Tran, N.K., Kitano, T. & Kost, G.J. Assessing Thrombin Generation at the Point of Care. Clinical Chemistry 55, 398-399 (2009).

6.              Burdick, G.W., Gruber, J.B., Nash, K.L., Chandra, S. & Sardar, D.K. Intensity parametrizations for electric-dipole transitions between Stark components in Er3+:Y3Al5O12. Journal of Alloys and Compounds 488, 632-637 (2009).

7.              Chan, J.W. & Lieu, D.K. Label-free biochemical characterization of stem cells using vibrational spectroscopy. Journal of Biophotonics 2, 656-668 (2009).

8.              Chandra, S., Deepak, F.L., Gruber, J.B. & Sardar, D.K. Synthesis, Morphology, and Optical Characterization of Nanocrystalline Er3+:Y2O3. Journal of Physical Chemistry C 114, 874-880 (2010).

9.              Chang, P.C., Izumiya, Y., Wu, C.Y., Fitzgerald, L.D., Campbell, M., Ellison, T.J., Lam, K.S., Luciw, P.A. & Kung, H.J. Kaposi's Sarcoma-associated Herpesvirus (KSHV) Encodes a SUMO E3 ligase That Is SIM-dependent and SUMO-2/3-specific. Journal of Biological Chemistry 285, 5266-5273 (2010).

10.           Chen, H.L., Libertini, S.J., Wang, Y., Kung, H.J., Ghosh, P. & Mudryj, M. ERK Regulates Calpain 2-induced Androgen Receptor Proteolysis in CWR22 Relapsed Prostate Tumor Cell Lines. Journal of Biological Chemistry 285, 2368-2374 (2010).

11.           Chisholm, C.D., Gentile, N.T., Gerhardt, R.T., Hauswald, M., Mycyk, M.B., Sinert, R. & Sokolove, P.E. Medical Advertisements in Medical Journals: the Case Against. Academic Emergency Medicine 16, 981-983 (2009).

12.           Chun, J.Y., Nadiminty, N., Dutt, S., Lou, W., Yang, J.C., Kung, H.J., Evans, C.P. & Gao, A.C. Interleukin-6 Regulates Androgen Synthesis in Prostate Cancer Cells. Clinical Cancer Research 15, 4815-4822 (2009).

13.           Cooke, M.S., Henderson, P.T. & Evans, M.D. Sources of Extracellular, Oxidatively-Modified DNA Lesions: Implications for Their Measurement in Urine. Journal of Clinical Biochemistry and Nutrition 45, 255-270 (2009).

14.           Corzett, T.H., Fodor, I.K., Choi, M.W., Walsworth, V.L., Turteltaub, K.W., McCutchen-Maloney, S.L. & Chromy, B.A. Statistical Analysis of Variation in the Human Plasma Proteome. Journal of Biomedicine and Biotechnology (2010).

15.           Dale, B.M., G.P. McNerney, W. Hubner, T. Huser, and B.K. Chen.  GFP as a tool to monitor HIV infection and transmission.  In Press, to appear in July 2010 issue of Methods.

16.           Dale, B. M., D. Traum, and S. Greenberg.  2009. Phagocytosis in macrophages lacking Cbl reveals an unsuspected role for Fc gamma receptor signaling and actin assembly in target binding.  J. Immunol.  182(9):  5654-62.

17.           Dale, B.M. and Greenberg, S. Fc receptors and Phagocytosis.  In:  Phagocyte-Pathogen Interactions:  Macrophages and the Host Response to Infection.   Ed. By D.G. and S. Gordon.  ASM Press.  July, 2009.

18.           Davis, C.E., Bogan, M.J., Sankaran, S., Molina, M.A., Loyola, B.R., Zhao, W.X., Benner, W.H., Schivo, M., Farquar, G.R., Kenyon, N.J. & Frank, M. Analysis of Volatile and Non-Volatile Biomarkers in Human Breath Using Differential Mobility Spectrometry (DMS). Ieee Sensors Journal 10, 114-122 (2010).

19.           Davis, C.E., Frank, M., Mizaikoff, B. & Oser, H. The Future of Sensors and Instrumentation for Human Breath Analysis. Ieee Sensors Journal 10, 3-6 (2010).

20.           DeLance, A.R., Van, K.C., Poon, C.C., Lyeth, B.G., Wenzel, H.J. & Schwartzkroin, P.A. DIETARY TREATMENTS FOR MODULATING POST-TRAUMATIC BRAIN HYPEREXCITABILITY. Epilepsia 50, 369-369 (2009).

21.           den Hartigh, L.J., Connolly-Rohrbach, J.E., Fore, S., Huser, T.R. & Rutledge, J.C. Fatty Acids from Very Low-Density Lipoprotein Lipolysis Products Induce Lipid Droplet Accumulation in Human Monocytes. Journal of Immunology 184, 3927-3936 (2010).

22.           DePonte, D.P., Doak, R.B., Hunter, M., Liu, Z.Q., Weierstall, U. & Spence, J.C.H. SEM imaging of liquid jets. Micron 40, 507-509 (2009).

23.           Despa, F., Luo, J.T., Li, J., Duan, Y. & Lam, K.S. Cholic acid micelles-controlling the size of the aqueous cavity by PEGylation. Physical Chemistry Chemical Physics 12, 1589-1594 (2010).

24.           Dwyre, D.M., Dursteler, B., Nashelsky, M., Friedman, K.D. & Raife, T.J. Value of ADAMTS13 Activity and Inhibitor in the Postmortem Diagnosis of Thrombotic Thrombocytopenic Purpura. Journal of Clinical Apheresis 24, 106-110 (2009).

25.           Dwyre, D.M. & Holland, P.V. Transfusion-Associated Graft-versus-Host Disease: response to Phipps et al. Vox Sanguinis 97, 359-359 (2009).

26.           Evans, J.W., Zawadzki, R.J., Jones, S.M., Olivier, S.S. & Werner, J.S. Error Budget Analysis for an Adaptive Optics Optical Coherence Tomography System. Optics Express 17, 13768-13784 (2009).

27.           Evans, J.W., Zawadzki, R.J., Liu, R., Chan, J.W., Lane, S.M. & Werner, J.S. Optical coherence tomography and Raman spectroscopy of the ex-vivo retina. Journal of Biophotonics 2, 398-406 (2009).

28.           Farwell, D.G., Meier, J.D., Park, J., Sun, Y., Coffman, H., Poirier, B., Phipps, J., Tinling, S., Enepekides, D.J. & Marcu, L. Time-Resolved Fluorescence Spectroscopy as a Diagnostic Technique of Oral Carcinoma Validation in the Hamster Buccal Pouch Model. Archives of Otolaryngology-Head & Neck Surgery 136, 126-133 (2010).

29.           Gordon, M.S., Hussey, M., Nagle, R.B., Lara, P.N., Mack, P.C., Dutcher, J., Samlowski, W., Clark, J.I., Quinn, D.I., Pan, C.X. & Crawford, D. Phase II Study of Erlotinib in Patients With Locally Advanced or Metastatic Papillary Histology Renal Cell Cancer: SWOG S0317. Journal of Clinical Oncology 27, 5788-5793 (2009).

30.           Gruber, J.B., Burdick, G.W., Valiev, U.V., Nash, K.L., Rakhimov, S.A. & Sardar, D.K. Energy levels and symmetry assignments for Stark components of Ho3+(4f(10)) in yttrium gallium garnet (Y3Ga5O12). Journal of Applied Physics 106 (2009).

31.           Guo, T. More power to X-rays: New developments in X-ray spectroscopy. Laser & Photonics Reviews 3, 591-622 (2009).

32.           Gurkoff, G., Beller, J., Katleba, K. & Lyeth, B. ELEVATED EXTRACELLULAR K+ REDUCES ACCUMULATION OF CA(2+) BUT NOT CELL DEATH FOLLOWING A SECOND INSULT IN-VITRO. Journal of Neurotrauma 26, P68 Hagiwara, Y., Sugishima, M., Khawn, H., Kinoshita, H., Inomata, K., Shang, L.X., Lagarias, J.C., Takahashi, Y. & Fukuyama, K. Structural Insights into Vinyl Reduction Regiospecificity of Phycocyanobilin:Ferredoxin Oxidoreductase (PcyA). Journal of Biological Chemistry 285, 1000-1007 (2010).

33.           Hah, S.S., Henderson, P.T. & Turteltaub, K.W. Recent advances in biomedical applications of accelerator mass spectrometry (vol 16, pg 54, 2009). Journal of Biomedical Science 16 (2009).

34.           Hah, S.S., Henderson, P.T. & Turteltaub, K.W. Towards biomarker-dependent individualized chemotherapy: Exploring cell-specific differences in oxaliplatin-DNA adduct distribution using accelerator mass spectrometry. Bioorganic & Medicinal Chemistry Letters 20, 2448-2451 (2010).

35.           Henderson, P.T., Li, T., He, M.H., Jain, T., Malfatti, M.A., Turteltaub, K.W. & Pan, C.X. Toward Personalized Chemotherapeutics: Correlation of Carboplatin Chemoresistance to Cellular Uptake, Drug Inactivation, DNA Damage, and Repair Using Nontoxic Drug Doses. Chemical Research in Toxicology 23, 108 (2010).

36.           Huser, T., Wilson, B. & Matthews, D.L. Biophotonics and Regenerative Medicine - ideal partners for research in the 21(st) Century. Journal of Biophotonics 2, 613-614 (2009).

37.           Jain, T., Li, T., He, M.L., Pan, C.X. & Henderson, P.T. Ultrasensitive Quantitation of Carboplatin-DNA Adducts Provides Mechanistic Insights into Breast Cancer Drug Resistance. Chemical Research in Toxicology 23, 60 (2010).

38.           Jiang, N. & Spence, J.C.H. Interpretation of O K-edge EELS in zircon using a structural variation approach. Ultramicroscopy 110, 89-93 (2009).

39.           Jiang, N. & Spence, J.C.H. Radiation damage in zircon by high-energy electron beams. Journal of Applied Physics 105 (2009).

40.           Jiang, N., Su, D., Qiu, J.R. & Spence, J.C.H. On the formation of Na nanoparticles in femtosecond-laser irradiated glasses. Journal of Applied Physics 107 (2010).

41.           Jiang, N., Su, D., Spence, J.C.H. & Howie, A. Valence electron energy-loss spectroscopy of nanoporous MgO. Applied Physics Letters 94 (2009).

42.           Kassu, A., Taguenang, J.M. & Sharma, A. Photochemically deposited surface relief gratings of an azo-dye-labeled phospholipid from the aqueous phase. Optics Letters 33, 1656-1658 (2008).

43.           Khan, I.H., Zhao, J., Ghosh, P., Ziman, M., Sweeney, C., Kung, H.J. & Luciw, P.A. Microbead Arrays for the Analysis of ErbB Receptor Tyrosine Kinase Activation and Dimerization in Breast Cancer Cells. Assay and Drug Development Technologies 8, 27-36 (2010).

44.           Kirian, R.A., Wang, X.Y., Weierstall, U., Schmidt, K.E., Spence, J.C.H., Hunter, M., Fromme, P., White, T., Chapman, H.N. & Holton, J. Femtosecond protein nanocrystallography-data analysis methods. Optics Express 18, 5713-5723 (2010).

45.           Kost, G.J., Hale, K.N., Brock, T.K., Louie, R.F., Gentile, N.L., Kitano, T.K. & Tran, N.K. Point-of-Care Testing for Disasters: Needs Assessment Strategic Planning, and Future Design. Clinics in Laboratory Medicine 29, 583-+ (2009).

46.           Kost, G.J., Tran, N.K., Sifontes, J.R., Mecozzi, D.M., Louie, R.F. & Abad, V.J. Point-of-care glucose testing in critically ill patients: Visual logistics and a glycemic variability hypothesis. Critical Care Medicine 37, 2841-2843 (2009).

47.           Lehmann, L.E., Alvarez, J., Hunfeld, K.P., Goglio, A., Kost, G.J., Louie, R.F., Raglio, A., Regueiro, B.J., Wissing, H. & Stuber, F. Potential clinical utility of polymerase chain reaction in microbiological testing for sepsis. Critical Care Medicine 37, 3085-3090 (2009).

48.           Lehmann, L.E., Alvarez, J., Hunfeld, K.P., Goglio, A.P., Kost, G.J., Louie, R.F., Raglio, A., Regueiro, B.J., Wissing, H. & Stueber, F. Model analysis of clinical utility of PCR in microbiological testing for sepsis. Infection 37, 44-44 (2009).

49.           Lieu, D.K., Liu, J., Siu, C.W., McNerney, G.P., Tse, H.F., Abu-Khalil, A., Huser, T. & Li, R.A. Absence of Transverse Tubules Contributes to Non-Uniform Ca2+ Wavefronts in Mouse and Human Embryonic Stem Cell-Derived Cardiomyocytes. Stem Cells and Development 18, 1493-1500 (2009).

50.           Lin, B., Urayama, S., Saroufeem, R.M.G., Matthews, D.L. & Demos, S.G. Real-time microscopic imaging of esophageal epithelial disease with autofluorescence under ultraviolet excitation. Optics Express 17, 12502-12509 (2009).

51.           Liu, R.W., Hong, H.S., Truong, A., Li, J., Duan, Y., Lam, K.S. & Jin, L.W. MEDI 63-Identification of a novel iodo-compound as an amyloid imaging agent for Alzheimer's disease. Abstracts of Papers of the American Chemical Society 236, 63-MEDI (2008).

52.           Lo, J.F.J., Butte, P., Fang, Q.Y., Chen, S.J., Papaioanou, T., Kim, E.S., Gundersen, M. & Marcu, L. Multilayered MOEMS Tunable Spectrometer for Fluorescence Lifetime Detection. Ieee Photonics Technology Letters 22, 486-488 (2010).

53.           Mackanos, M.A. & Contag, C.H. FTIR microspectroscopy for improved prostate cancer diagnosis. Trends in Biotechnology 27, 661-663 (2009).

54.           Mackanos, M.A., Larabi, M., Shinde, R., Simanovskii, D.M., Guccione, S. & Contag, C.H. Laser-induced disruption of systemically administered liposomes for targeted drug delivery. Journal of Biomedical Optics 14 (2009).

55.           Madan, A. & Urayama, S. Glucose-impairment Predating Pancreatic Cancer in Patients Referred for Endoscopic Ultrasound. American Journal of Gastroenterology 104, 170 (2009).

56.           Maverakis, E., Menezes, J.S., Ametani, A., Han, M., Stevens, D.B., He, Y., Wang, Y., Ono, Y., Miyamura, Y., Lam, K.S., Ward, E.S. & Sercarz, E.E. Molecular mimics can induce a nonautoaggressive repertoire that preempts induction of autoimmunity. Proceedings of the National Academy of Sciences of the United States of America 107, 2550-2555 (2010).

57.           McKeown, J.T. & Spence, J.C.H. The kinematic convergent-beam electron diffraction method for nanocrystal structure determination. Journal of Applied Physics 106 (2009).


59.           Meng, L.P., Lorsbach, B.A., Sparks, T.C., Fettinger, J.C. & Kurth, M.J. Parallel Synthesis of Bis-heterocyclic Isoxazolylmethyl- and Isoxazolinylmethylpyrazoles. Journal of Combinatorial Chemistry 12, 129-136 (2010).

60.           Miller, A.E., Hollars, C.W., Lane, S.M. & Laurence, T.A. Fluorescence Cross-Correlation Spectroscopy as a Universal Method for Protein Detection with Low False Positives. Analytical Chemistry 81, 5614-5622 (2009).

61.           Moritz, T.J., Brunberg, J.A., Krol, D.M., Wachsmann-Hogiu, S., Lane, S.M. & Chan, J.W. Characterisation of FXTAS related isolated intranuclear protein inclusions using laser tweezers Raman spectroscopy. Journal of Raman Spectroscopy 41, 33-39 (2010).

62.           Moritz, T.J., Taylor, D.S., Polage, C.R., Krol, D.M., Lane, S.M. & Chan, J.W. Effect of Cefazolin Treatment on the Nonresonant Raman Signatures of the Metabolic State of Individual Escherichia coil Cells. Analytical Chemistry 82, 2703-2710 (2010).

63.           Nyunt, M.T., Dicus, C.W., Cui, Y.Y., Yappert, M.C., Huser, T.R., Nantz, M.H. & Wu, J. Physico-Chemical Characterization of Polylipid Nanoparticles for Gene Delivery to the Liver. Bioconjugate Chemistry 20, 2047-2054 (2009).

64.           Pan, C.X., Li, T., He, M.L., Jain, T., Malfatti, M., Turteltaub, K.W. & Henderson, P.T. Preclinical Oxaliplatin Microdosing Studies for Personalized Medicine Applications. Chemical Research in Toxicology 23, 109 (2010).

65.           Pan, C.X., Li, T., He, M.L., White, R.D., Gandara, D., Mack, P.C., Lara, P.N., Turteltaub, K. & Henderson, P. Preclinical studies for a phase 0 microdosing trial to identify chemoresistance in non-small cell lung cancer. Journal of Thoracic Oncology 4, S554-S554 (2009).

66.           Peterson, L.E. & Coleman, M.A. Logistic ensembles of Random Spherical Linear Oracles for microarray classification. International Journal of Data Mining and Bioinformatics 3, 382-397 (2009).

67.           Piyawattanametha, W., Ra, H., Mandella, M.J., Loewke, K., Wang, T.D., Kino, G.S., Solgaard, O. & Contag, C.H. 3-D Near-Infrared Fluorescence Imaging Using an MEMS-Based Miniature Dual-Axis Confocal Microscope. Ieee Journal of Selected Topics in Quantum Electronics 15, 1344-1350 (2009).

68.           Qu, Y.Q., Sutherland, A.M. & Guo, T. Carbon dioxide reforming of methane by Ni/Co nanoparticle catalysts immobilized on single-walled carbon nanotubes. Energy & Fuels 22, 2183-2187 (2008).

69.           Rockwell, N.C., Shang, L., Martin, S.S. & Lagarias, J.C. Distinct classes of red/far-red photochemistry within the phytochrome superfamily. Proceedings of the National Academy of Sciences of the United States of America 106, 6123-6127 (2009).

70.           Saldin, D.K., Shneerson, V.L., Howells, M.R., Marchesini, S., Chapman, H.N., Bogan, M., Shapiro, D., Kirian, R.A., Weierstall, U., Schmidt, K.E. & Spence, J.C.H. Structure of a single particle from scattering by many particles randomly oriented about an axis: toward structure solution without crystallization? New Journal of Physics 12 (2010).

71.           Saldin, D.K., Shneerson, V.L., Starodub, D. & Spence, J.C.H. Reconstruction from a single diffraction pattern of azimuthally projected electron density of molecules aligned parallel to a single axis. Acta Crystallographica Section A 66, 32-37 (2010).

72.           Sardar, D.K., Yust, B.G., Barrera, F.J., Mimun, L.C. & Tsin, A.T.C. Optical absorption and scattering of bovine cornea, lens and retina in the visible region. Lasers in Medical Science 24, 839-847 (2009).

73.           Shahlaie, K., Lyeth, B.G., Gurkoff, G.G., Muizelaar, J.P. & Berman, R.F. Neuroprotective Effects of Selective N-Type VGCC Blockade on Stretch-Injury-Induced Calcium Dynamics in Cortical Neurons. Journal of Neurotrauma 27, 175-187 (2010).

74.           Sisler, I.Y., Koehler, E., Koyama, T., Domm, J.A., Ryan, R., Levine, J.E., Pulsipher, M.A., Haut, P.R., Schultz, K.R., Taylor, D.S. & Frangoul, H.A. Impact of Conditioning Regimen in Allogeneic Hematopoetic Stem Cell Transplantation for Children with Acute Myelogenous Leukemia beyond First Complete Remission: A Pediatric Blood and Marrow Transplant Consortium (PBMTC) Study. Biology of Blood and Marrow Transplantation 15, 1620-1627 (2009).

75.           Spillane, K.M., Dasgupta, J., Lagarias, J.C. & Mathies, R.A. Homogeneity of Phytochrome Cph1 Vibronic Absorption Revealed by Resonance Raman Intensity Analysis. Journal of the American Chemical Society 131, 13946-+ (2009).

76.           Stephens, D.N., Park, J., Sun, Y., Papaioannou, T. & Marcu, L. Intraluminal fluorescence spectroscopy catheter with ultrasound guidance. Journal of Biomedical Optics 14 (2009).

77.           Su, D., Jiang, N., Qiu, J.R. & Spence, J.C.H. Microstructures induced by femtosecond laser pulses inside glasses. Journal of Materials Research 24, 1983-1988 (2009).

78.           Sun, Y., Park, J., Stephens, D.N., Jo, J.A., Sun, L., Cannata, J.M., Saroufeem, R.M.G., Shung, K.K. & Marcu, L. Development of a dual-modal tissue diagnostic system combining time-resolved fluorescence spectroscopy and ultrasonic backscatter microscopy. Review of Scientific Instruments 80 (2009).

79.           Sun, Y., Phipps, J., Elson, D.S., Stoy, H., Tinling, S., Meier, J., Poirier, B., Chuang, F.S., Farwell, D.G. & Marcu, L. Fluorescence lifetime imaging microscopy: in vivo application to diagnosis of oral carcinoma. Optics Letters 34, 2081-2083 (2009).


81.           Sun, Y., Sun, Y.H., Xie, H.T., Elson, D., Lam, M., Farwell, G., Cannata, J., Shung, K. & Marcu, L. MULTIMODAL TISSUE DIAGNOSTIC SYSTEM COMBINING TIME-RESOLVED FLUORESCENCE SPECTROSCOPY, ULTRASOUND AND PHOTOACOUSTIC IMAGING. Lasers in Surgery and Medicine, 51-52 (2010).

82.           Sutton, E.J., Boddington, S.E., Nedopil, A.J., Henning, T.D., Demos, S.G., Baehner, R., Sennino, B., Lu, Y. & Daldrup-Link, H.E. An optical imaging method to monitor stem cell migration in a model of immune-mediated arthritis. Optics Express 17, 24403-24413 (2009).

83.           Taguenang, J.M., Kassu, A., Ruffin, P.B., Brantley, C., Edwards, E. & Sharma, A. Reversible UV degradation of PMMA plastic optical fibers. Optics Communications 281, 2089-2092 (2008).

84.           Thompson, D.L., Pearson, F., Thomas, C., Rao, R., Matthews, D., Albala, J.S., Wachsmann-Hogiu, S. & Coleman, M.A. An Adaptable, Portable Microarray Reader for Biodetection. Sensors 9, 2524-2537 (2009).

85.           Tran, S., Lewalski, E.A., Dwyre, D.M., Hagar, Y., Beckett, L., Janatpour, K.A. & Holland, P.V. Does donating blood for the first time during a national emergency create a better commitment to donating again? Vox Sanguinis 98, e219-e224 (2010).

86.           Tukel, C., Wilson, R.P., Nishimori, J.H., Pezeshki, M., Chromy, B.A. & Baumler, A.J. Responses to Amyloids of Microbial and Host Origin Are Mediated through Toll-like Receptor 2. Cell Host & Microbe 6, 45-53 (2009).

87.           Urayama, S., Zou, W., Brooks, K. & Tolstikov, V. Comprehensive mass spectrometry based metabolic profiling of blood plasma reveals potent discriminatory classifiers of pancreatic cancer. Rapid Communications in Mass Spectrometry 24, 613-620 (2010).

88.           Weeks, T., Schie, I.W., Wachsmann-Hogiu, S. & Huser, T. Signal generation and Raman-resonant imaging by non-degenerate four-wave mixing under tight focusing conditions. Journal of Biophotonics 3, 169-175 (2010).

89.           Weeks, T., Wachsmann-Hogiu, S. & Huser, T. Raman Microscopy based on Doubly-Resonant Four-Wave Mixing (DR-FWM). Optics Express 17, 17044-17051 (2009).

90.           Wilson, B.C., Vitkin, I.A. & Matthews, D.L. The potential of biophotonic techniques in stem cell tracking and monitoring of tissue regeneration applied to cardiac stem cell therapy. Journal of Biophotonics 2, 669-681 (2009).

91.           Xie, H.T., Kreutzer, U. & Jue, T. Oximetry with the NMR signals of hemoglobin Val E11 and Tyr C7. European Journal of Applied Physiology 107, 325-333 (2009).

92.           Rasanamar Sandhu, Chong-xian Pan, Theodore Wun, Danielle Harvey, Hong Zhou, Richard H. White, Helen K. ChewThe Incidence of Venous Thromboembolism and its Effect on Survival Among Patients With Primary Bladder Cancer. Cancer. In press.

93.           Helms, M.W., Kemming, D., Contag, CH, Pospisil, H, Bartkowiak, K, Wang, A, Chang, SY, Buerger, H, Brandt, BH (2009). TOB1 is regulated by EGF-dependent HER2 and EGFR signaling, is highly phosphorylated, and indicates poor prognosis in node-negative breast cancer. Cancer Res 69, 5049-5056.

94.           Watkins, GA, Jones, EF, Shell, MS, VanBrocklin, HF, Pan, M-H, Hanrahan, SM, Feng, JJ, He, J, Sounni, NE, Dill, KA, Contag, CH, Coussens, LM, Franc, BL. (2009) Development of an optimized activatable MMP-14 targeted SPECT imaging probe. Bioorg Med Chem  17:653-659.

95.           Hotson, AN, Hardy, JW, Hale, MB, Contag, CH and Nolan, GP (2009) The T cell intracellular signaling network is reprogrammed within hours of bacteremia via secondary signals. J. Immunol. 182: 7558-7568. PMID: 19494279

96.           Lee, SW, Padmanabhan P, Ray P, Gambhir SS, Doyle T, Contag CH, Goodman SB, Biswal, S (2009) Stem cell-mediated accelerated bone healing observed with in vivo molecular and small animal imaging technologies in a model of skeletal injury. J Orthop Res. 27:295-302.

97.           van der Bogt KE, Schrepfer S, Yu J, Sheikh AY, Hoyt G, Govaert JA, Velotta JB, Contag CH, Robbins RC, Wu JC. (2009) Comparison of transplantation of adipose tissue- and bone marrow-derived mesenchymal stem cells in the infarcted heart. Transplantation, 87:642-652.

98.           Liu JT, Helms MW, Mandella MJ, Crawford JM, Kino GS, Contag CH (2009) Quantifying cell-surface biomarker expression in thick tissues with ratiometric three-dimensional microscopy. Biophys J. 96:2405-2414.

99.           Ra, H, Gonzalez-Gonzalez, E, Smith, BR, Gambhir, SS, Kino, GS,  Solgaard, O, Kaspar, RL, Contag, CH (2010) Assessing delivery and quantifying efficacy of siRNA therapeutics in the skin using a dual-axis confocal microscope. JBO, In Press.

100.        Piyawattanametha, W, Ra, H, Mandella, MJ, Qiu, Z, Friedland, S, Liu, JTC, Loewke, K, Kino, GS, Solgaard, O, Wang, TD, Contag, CH (2010) Clinical Evaluation of Near-infrared Microendoscopy in the Human Colon. JBO In Press.

101.        Raman and Surface-Enhanced Raman Spectroscopic (SERS) studies of the 15-mer DNA Thrombin Binding Aptamer. C. V. Pagba, S. M. Lane and S. Wachsmann-Hogiu. Journal of Raman Spectroscopy, DOI: 10.1002/jrs.2428

102.        Chan J, Taylor DS, Thompson D. The effect of cell fixation on the discrimination of normal and Leukemia cell with laser tweezers Raman spectroscopy. Biopolymers, 91(2): 132-9, 2009.

103.        Pulsipher M, Horwitz E, Haight A, Kadota R, Chen A, Frangoul H, Cooper L, Jacobsohn D, Goyal R, Mitchell D, Nieder M, Yanik G, Cowan M, Soni S, Gardner S, Shenoy S, Taylor DS, Cairo M, Schultz K.. Advancement of Pediatric Blood and Marrow Transplantation Research in North America: Priorities of the Pediatric Blood and Marrow Transplant Consortium. Bio blood Marrow Transplant, 2010. *IN PRESS*

104.        Nadiminty N, Lou W, Sun M, Chen J, Yue J, Kung HJ, Evans CP, Zhou Q, Gao A.  Aberrant activation of the androgen receptor by NF-kB2/p52 prostate cancer cells.  Cancer Res. 70(8):3309-3319.  (2010)

105.        Suchodolski PF, Izumiya Y, Lupiani B, Ajithdoss DK, Lee LF, Kung HJ, Reddy SM.  Both homo and heterodimers of Marek's disease virus encoded Meq protein contribute to transformation of lymphocytes in chickens.  Virology 399:312-321.  (2010)

106.        Wu S, Chang PC, Yang J, Chu CY, Wang LY, Chen NT, Desai SJ, Ma AH, Lo SH, Evans CP, Lam K, Kung HJ.  Autophagy Blockade Sensitizes Prostate Cancer Cells towards Src Family Kinase Inhibitors.  Genes and Cancer (1); 40-49.  (2010)

107.        Chang PC, Izumiya I, Wu CY, Fitzgerald LD, Campbell M, Ellison TJ, Lam KS, Luciw PA, and Kung HJ.  Kaposi’s sarcoma- associated herpesvirus (KSHV) encodes a SUMO E3 ligase which is SIM-dependent and SUMO-2/3-specific.  J. Biol. Chem. 285:5266-5273.  (2010)

108.        Chang PC, Fitzgerald LD, Van Geelen A, Izumiya Y, Ellison TJ, Wang DH, Ann DK, Luciw PA, Kung HJ.  Kruppel-associated box domain-associated protein-1 as a latency regulator for Kaposi's sarcoma-associated herpesvirus and its modulation by the viral protein kinase.  Cancer Res.  69(14):5681-9 (2009)

109.        Zou JX, Guo L, Revenko AS, Tepper CG, Gemo AT, Kung HJ, Chen HW.  Androgen-induced Coactivator ANCCA Mediates Specific Androgen Receptor Signaling in Prostate Cancer.  Cancer Res. Mar 24 (2009)

110.        Kim RH, Bold RJ and Kung HJ.  ADI, autophagy and apoptosis:  Metabolic stress as a therapeutic option for prostate cancer.  Autophagy 5(4), 1-2, (2009)

111.        Ellison TJ, Izumiya Y, Izumiya C, Luciw PA, Kung HJ.  A comprehensive analysis of recruitment and transactivation potential of K-Rta and K-bZIP during reactivation of Kaposi’s sarcoma-associated herpesvirus.  Virology 387(1):76-88.  (2009)

112.        Izumiya Y, Izumiya C, Hsia D, Ellison FJ, Luciw PA, Kung HJ.  NF-kappaB Serves as a Cellular Sensor of KSHV Latency and Negatively Regulates K-Rta by antagonizing the RBP-JK coactivator.  J. Virol. 83(9):4435-4446.  (2009)

113.        Guo Z, Yang X, Sun F, Jiang R, Linn D, Chen H, Kong X, Melamed J, Tepper C, Kung HJ, Brodie A, Qiu Y.  A Novel Androgen Receptor Splice Variant Promotes Androgen-indepenent Growth by Regulating a Unique Set of Target Genes in Human Prostate Cancer Cells.  Cancer Res. 69(6):2305-2313.  ( 2009)

114.        Purnell PR, Mack PC, Tepper CG, Evans CP, Green TP, Gumerlock PH, Lara PN, Gandara DR, Kung HJ, Gautschi O.  The Src inhibitor AZD0530 blocks invasion and may act as a radiosensitizer in lung cancer cells. J Thorac Oncol. 4(4):448-454.  (2009)

115.        Ajithdoss DK, Reddy SM, Suchodolski PF, Lee LF, Kung HJ, Lupiani B.  In vitro characterization of the Meq proteins of Marek’s disease virus vaccine strain CV1988.  Virus Res. Feb. 2 (2009)

116.        Yang JC, Ok JH, Busby JE, Borowsky AD, Kung HJ, Evans CP.  Aberrant activation of androgen receptor in a new neuropeptide-autocrine model of androgen-insensitive prostate cancer.  Cancer Res. 69(1):151-60.  (2009)

117.        Kung HJ, Evans CP.  Oncogenic actation of androgen receptor.  Urol. Oncol. 27(1):48-52 Review.  (2009)

118.        Suchodolski P, Izumiya Y, Lupiani B, Ajithdoss D, Gilad O, Lee LF, Kung HJ, and Reddy SJ.  Homodimerization of Marek’s disease virus encoded Meq protein is not sufficient for transformation of lymphocytes in chicken. J. Virol. 83(2):859-869.   (2009)

119.        Browning, N.D., Campbell, G.H., Evans, J.E., LaGrange, T.B. and B.W. Reed (2010) Electron microscopy and spectroscopy on the ultrafast timescale. Chem. Phys. Chem. (In Press)

120.        Evans, J.E., Renault, L., Stahlberg, H. (2010) Structure determination using electron crystallography In: 3D-Electron Microscopy in Life Sciences (Textbook on DVD). Ed. A. Verkleij, E.V. Orlova, and A. Leis. First edition. 3DEM Network of Excellence, European Union (In Press)

121.        Evans, J.E., Campbell, G.H., Kim, J.S., LaGrange, T.B., Reed, B.W., Taheri, M.L., Browning, N.D. (2009) Single Shot Nanosecond Imaging in the Dynamic TEM. JEOL News 44: 12 – 16.

122.        Reed, B.W., Armstrong, M.R., Browning, N.D., Campbell, G.H., Evans, J.E., LaGrange, T.B., Masiel, D. (2009) The evolution of ultrafast electron microscope instrumentation. Microscopy and Microanalysis 15, 272-281.

123.        Evans, J.E., Arslan, I., Jaeger, D.L., Marquis, E.A., Gorman, B.P., Browning, N.D. (2009) 3-D Atom Probe Tomography of Resin Embedded Samples Microscopy and Microanalysis 15 (Suppl.S2): 274-275

124.        Barnholt, K. E., Kota, R. S., Aung, H. H. & Rutledge, J. C. Adenosine blocks IFN-gamma induced phosphorylation of STAT1 on serine 727 to reduce macrophage activation. J Immunol 183, 6767-6777, doi:jimmunol.0900331 [pii] 10.4049/jimmunol.0900331 (2009).

125.        Sitnick, M., Bodine, S. C. & Rutledge, J. C. Chronic high fat feeding attenuates load-induced hypertrophy in mice. J Physiol 587, 5753-5765, doi:jphysiol.2009.180174 [pii] 10.1113/jphysiol.2009.180174 (2009).

126.        Kaiqin Chu, Nicholas George, and Wanli Chi, Incoherently combining logarithmic aspheric lenses for extended depth of field, Applied Optics, Vol. 48, Issue 28, pp. 5371-5379 (2009)

127.        Beller, H. R., Legler, T.C., Bourguet, F., Letain, T. E., Kane, S.R., and Coleman, M.A. (2009). Identification of c-type cytochromes involved in anaerobic, bacterial U(IV) oxidation. Biodegradation. 20:45-53.

128.        Blanchette, C.D., Law, R.W.,  Benner, H., Pesavento, B., Cappuccio, J.A., Walsworth, V., Kuhn, E., Corzett, M., Chromy, B., Segelke, S., Coleman, M.A., Bench, G., Hoeprich, P., and Sulchek, T. (2009) Quantifying size distributions of nanolipoprotein particles (NLPs): A combined atomic force microscopy (AFM), ion mobility spectrometry (IMS) and molecular dynamic (MD) simulation study. J Lipid Res. 49:1420

129.        Blanchette, C.D., Cappuccio, J.A., Kuhn, E.A., Segelke, B.W., Coleman, M.A., Chromy, B.A., Bench, G., Hoeprich, P.D., Sulchek, T.A. (2009) Atomic Force Microscopy Differentiates Discrete Size Distributions between Membrane Protein Containing and Empty Nanolipoprotein Particles. Biochimica et Biophysica Acta - Biomembranes. 1788:724-31.

130.        Thompson, D., Pearson, F., Rao, R., Matthews, D. Albala, A., Wachsmann-Hogiu, S., and Coleman, M.A. (2009) A portable hand-held microarray reader for biodetection. Sensors. 9: 2524-2537.

131.        Baker, S.E., Hopkins, R.C., Blanchette, C.D., Walsworth, V.L., Sumbad, R., Fischer,  N.O., Kuhn, E.A., Coleman, M.A., Chromy, B.A., Létant, S.E., Hoeprich, P.D., Adams, M.W., and Henderson, P.T. (2009) Active Membrane-Bound Hydrogenase Incorporation into Soluble Nanoparticles. J. Am. Chem. Soc. 22:7508-9.

132.        Martínez, A., Blanco, B., Carnevale, A., Mora, M.A., Coleman, M.A. Romero-Talamás, C.A. and Frías, S. (In Press) Assessment of immediate DNA damage to workers occupationally exposed to low dose of ionizing radiation using the Comet Assay.

133.        M.J. Bogan, S. Boutet, H.N. Chapman, S. Marchesini, A. Barty, W.H. Benner, U. Rohner, M. Frank, S.P. Hau-Riege, S. Bajt, B. Woods, M.M. Seibert, B. Iwan, N. Timneanu, J. Hajdu, J. Schulz , “Aerosol Imaging with a Soft X-ray Free Electron Laser,”, submitted to Aerosol Science and Technology, August 2009.

134.        N. C. Rockwell, H. Wolfger, K. Kuchler, & J. Thorner (2009) “ABC transporter Pdr10 regulates the membrane microenvironment of a subset of plasma membrane proteins in Saccharomyces cerevisiae,” Journal of Membrane Biology, 229, 27-52.

135.        Satake N, Sakamoto K. Acute Lymphoblastic Leukemia. e-Medicine, 2009

136.        Satake N, Yoon J. Acute Lymphoblastic Leukemia. 3-Medicine, 2009

137.        Marsh R, Satake N, Biroschak J, Jacobs T, Johnson J, Jordan M, Bleesing J, Filipovich AH, Zhang K. STX11 Mutations in North American Parents with Familial Hemophagocytytic Lymphohistiocytosis result in Variable Degrees of NK Cell Dysfunction with Impact upon Clinical Phenotypes. Pediatric Blood and Cancer. 2010. *IN PRESS*

138.        Salmi D, Patel C, Imashuku S, Shimada H, Satake N.  Neuroblastoma of unknown primary site with periorbiral bone metastasis in a child. Pediatric Blood and Cancer. 2010. *IN PRESS*

139.        Coldwell K, Cutts SM, Ognibene TJ, Henderson PT, Phillips DR Detection of adriamycin-DNA adducts by accelerator mass spectrometry. Methods Mol Biol. 2010;613:103-18. PMID: 19997880

140.        Hah SS, Henderson, PT, Turteltaub KW Towards biomarker-dependent individualized chemotherapy: Exploring cell-specific differences in oxaliplatin-DNA adducts distribution using accelerator mass spectrometry.  Bioorganic and  Medicinal  Chemistry Letters 2010, March 7, e-pub ahead of print.          PMID: 20335033

141.        J.A. Cappuccio, A.K. Hinz, E.A. Kuhn, J.E. Fletcher, E.S. Arroyo, P.T. Henderson, C.D. Blanchette, V.L. Walsworth, M.H. Corzett, R.J. Law, J.B. Pesavento, B.W. Segelke, T.A. Sulchek, B.A. Chromy, F. Katzen, T. Peterson, G. Bench, W. Kudlicki, P.D. Hoeprich Jr, M.A. Coleman, Cell-Free Expression for Nanolipoprotein Particles: Building a High-Throughput Membrane Protein Solubility Platform, Methods in Molecular Biology, 2009, 498, 273-296

142.        D. Talavera, D.C. Dafoe, T. Ng, S. Wachsmann-Hogiu, C. Castillo-Henkel, D. L. Farkas, “Enhancement of embryonic stem cell differentiation promoted by avian chorioallantoic membranes”, Tissue Engineering, 2009, online ahead of print.

143.        S. Wachsmann-Hogiu, T. Weeks, T. Huser, “Chemical analysis in vivo and in vitro Raman spectroscopy – from single cells to humans”, Current Opinions in Biotechnology, Vol. 20, 2009, pp. 63-73.

144.        T. Weeks, I. Schie, S. Wachsmann-Hogiu, T. Huser, “ Non-degenerate coherent anti-Stokes Raman scattering (CARS) microscopy”, J. of Biophotonics, online DOI 10.1002/jbio.200900068, 2009.

145.        Z. J. Smith and A. J. Berger, “Validation of an Integrated Raman- and Angular-Scattering Microscopy system on heterogeneous bead mixtures and single human immune cells,” Applied Optics 48 (10), D109 – D120 (2009).

146.        Z. J. Smith, J.-C. E. Wang, T. Wightman, S. A. Quataert, and A. J. Berger, “Integrated Raman and Angular Scattering Microscopy Reveals Chemical and Morphological Differences Between Activated and Unactivated CD8+ T Lymphocytes,” Journal of Biomedical Optics, in press.

147.        Z. J. Smith and A. J. Berger, “Construction of an Integrated Raman and Angular Scattering Microscope,” Review of Scientific Instruments 80, 044302 (2009).

148.        J. D. Meier, H. Xie, Y. Sun, Y.H. Sun, B. Poirier, N. Hatami, L. Marcu, D. G. Farwell, Fluorescence spectroscopy as a diagnostic tool in head and neck carcinoma, Otolaryngol Head Neck Surg, In press.

149.        P.V. Butte, Q. Fang, W. H. Yang, B. Pikul, K.L. Black, L. Marcu, Intraoperative delineation of primary brain tumors using time-resolved fluorescence spectroscopy, Journal of Biomedical Optics, Vol15(2), 027008, 2010.

150.        Marcu L, Fluorescence lifetime in cardiovascular diagnostics. Journal of Biomedical Optics. 15(1):011106, 2010

151.        J. Yan, Y. Sun, H. Zhu, L. Marcu, A. Revzin, Enzyme-containing hydrogel micropatterns serving a dual purpose of cell sequestration and metabolite detection, Biosensors and Bioelectronics, 24(8): 2604-10, 2009.

152.        J. Lo, S.J. Chen, Q. Fang, T. Papaioannou, E.S. Kim, M. Gundersen, L. Marcu, Performance of a diaphragmed microlens for a packaged microspectrometer, Sensors, 9, 2009.

153.        L. Marcu, J. A. Jo, Q. Fang, T. Papaioannou, T. Reil, J-H Qiao, J. D. Baker, J. A. Freischlag, M. C. Fishbein, Detection of Rupture-Prone Atherosclerotic Plaques by Time-Resolved Laser Induced Fluorescence Spectroscopy, Atherosclerosis, 204:156–164, 2009.

154.        Kelly L. Nash, Robert C. Dennis, Nathan J. Ray, John B. Gruber and Dhiraj K. Sardar. “Absorption Intensities, Emission Cross Sections and Crystal Field Analysis of Selected Intermanifold Transitions of Ho3+in Ho3+:Y2O3 Nanocrystals,” J. Appl. Phys. 106 063117 (2009)

155.        Kelly L. Nash, Robert C. Dennis, John B. Gruber and Dhiraj K. Sardar. “Intensity Analysis and Energy-Level Modeling of Nd3+ in Nd3+:Y2O3 Nanocrystals in Polymeric Hosts,” J. Appl. Phys. 105 033102 (2009) 

156.        Elliott, S.L., Choi, S.S., Doble, N., Hardy, J.L., Evans, J.W. & Werner, J.S.  (2009)  Role of high-order aberrations in senescent changes in spatial vision.  Journal of Vision, 9(2):24, 1-16.  PMCID: PMC2735342

157.        Gerth, C., Zawadzki, R.J., Héon, E. & Werner, J.S.  (2009)  High-resolution retinal imaging of young children using a hand-held scanner and Fourier-domain OCT.  Journal of American Association for Pediatric Ophthalmology and Strabismus, 13, 72-74.  PMCID: PMC 2730587

158.        Gerth, C., Zawadzki, R.J., Werner, J.S. & Héon, E. (2009)  Retinal microscructure in patients with EFEMP1 retinal dystrophy evaluated by Fourier-domain OCT.  Eye, 23, 480-483.   PMCID: PMC 2734481

159.        Wilson, D.W., Aung, H.H., Lame, M.W., Plummer, L., Pinkerton K.E., Ham, W., Kleeman, M., Norris, J.W. and F. Tablin. Exposure of Mice to concentrated ambient particulate matter results in platelet and systemic cytokine activation. Inhalation Toxicology. ** IN PRESS **

160.        Gerth, C., Zawadzki, R.J. Werner, J.S. & Héon, E. (2009)  Detailed analysis of retinal function and morphology in a patient with autosomal recessive bestrophinopathy (ARB).  Documenta Ophthalmologica, 118, 239-246.  PMCID: PMC

161.        Zawadzki, R.J., Choi, S.S., Fuller, A.R., Evans, J.W., Hamann, B. & Werner, J.S.   (2009)  Cellular resolution volumetric in vivoretinal imaging with adaptive optics – optical coherence tomography.  Optics Express, 17, 4084-4094.   PMCID: PMC2715892

162.        Park, S.S., Zawadzki, R.J., Truong, S.N., Choi, S.S. & Werner, J.S.  (2009) Microcystoid maculopathy associated with tamoxifen diagnosed by high resolution Fourier-domain optical coherence tomography.   Retinal Cases & Brief Reports, 3, 33-35. PMCID: PMC

163.        Park, S.S., Zawadzki, R.J. & Werner, J.S. (2009)  Letters to the Editor:  OCT interpretation.  Ophthalmology, 116, 1419-1420.

164.    Werner, J.S., Elliott, S.L., Choi, S.S. & Doble, N.  (2009)  Spherical aberration yielding optimum visual performance:  Evaluation of intraocular lenses using adaptive optics simulation.  Journal of Cataract & Refractive Surgery, 35, 1229-1233.  PMCID: PMC114660.


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